Documentation
pySolo User Manual
- July 28, 2011: Installation
- July 28, 2011: First run
- July 28, 2011: Configuration
- July 28, 2011: Using pySolo - The database
- July 28, 2011: Using pySolo - The analysis
- July 28, 2011: Appendix 1.1 - Using TriKinetics Software under linux
- July 28, 2011: Appendix 1.2 - TriKinetics data handling
- October 10, 2013: Python dependencies for pySolo and pySolo-Video
pySolo Video Extension
- July 28, 2011: General Requirements
- July 28, 2011: Building a recording chamber
- July 28, 2011: Hacking a webcam to improve lighting conditions
- July 28, 2011: Validation of video analysis
- November 28, 2011: Troubleshooting and bugs
- October 10, 2013: Python dependencies for pySolo and pySolo-Video
- December 6, 2013: Sleep deprivator
pySolo Developer Manual
- July 28, 2011: The DAMslice class
- July 28, 2011: The tree coordinates system
- July 28, 2011: Structure of the files
Start from here
Papers using pySolo
Drosophila strategies to study psychiatric disorders.
van Alphen B, van Swinderen B.
Brain Res Bull. 2011 Sep 17.Drosophila QVR/SSS Modulates the Activation and C-Type Inactivation Kinetics of Shaker K+ Channels.
Dean T, Xu R, Joiner W, Sehgal A, Hoshi T.
J Neurosci. 2011 Aug 3;31(31):11387-95.pySolo: a complete suite for sleep analysis in Drosophila
Gilestro GF and Cirelli C
Bioinformatics, 2009 Jun 1;25(11):1466-7.Widespread changes in synaptic markers as a function of sleep and wakefulness in Drosophila.
Gilestro GF, Tononi G, Cirelli C.
Science. 2009 Apr 3;324(5923):109-12.Identification of a neural circuit that underlies the effects of octopamine on sleep:wake behavior.
Crocker A, Shahidullah M, Levitan IB, Sehgal A.
Neuron. 2010 Mar 11;65(5):670-81.The steroid molting hormone Ecdysone regulates sleep in adult Drosophila melanogaster.
Ishimoto H, Kitamoto T.
Genetics. 2010 May;185(1):269-81Clock and cycle Limit Starvation-Induced Sleep Loss in Drosophila.
Keene AC, Duboué ER, McDonald DM, Dus M, Suh GS, Waddell S, Blau J.
Curr Biol. 2010 Jul 13;20(13):1209-15.
